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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST046313
species: Pinus taeda
source: microPC, original name: miR159

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGAGAGCTCC

miRNA*
AGCTTTCTTCAGTCCAACGA

mismatches: 1
bulges: 0

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pre-miRNA
GGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGGC
AAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCC


dot-bracket secondary structure
(((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..))
)))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))



SIMILARITIES
miRBase pta-MIR159b: 1e-94

PMRD pta-miR159b: 1e-94

microPC miR159: 1e-94
UniProt no hits

RFAM no hits

Identical with: pta-miR159b from PMRD (MNEST051554)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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